Variant report

Variant	rs1015916
Chromosome Location	chr6:82072711-82072712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82061373..82063037-chr6:82072058..82074412,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10943802	0.82[AMR][1000 genomes]
rs11755408	0.94[EUR][1000 genomes]
rs11759964	0.94[EUR][1000 genomes]
rs12196166	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12199697	0.95[EUR][1000 genomes]
rs12199755	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202413	0.93[EUR][1000 genomes]
rs12215776	0.81[EUR][1000 genomes]
rs12215976	0.94[EUR][1000 genomes]
rs12216032	0.93[EUR][1000 genomes]
rs12216079	0.94[EUR][1000 genomes]
rs12216088	0.94[EUR][1000 genomes]
rs12216146	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13197280	0.93[EUR][1000 genomes]
rs13211565	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13213078	0.82[AMR][1000 genomes]
rs13219498	0.94[EUR][1000 genomes]
rs1361835	0.81[EUR][1000 genomes]
rs1419024	0.85[EUR][1000 genomes]
rs1419026	0.83[EUR][1000 genomes]
rs2083941	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2096259	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2197337	0.82[EUR][1000 genomes]
rs2197339	0.84[AMR][1000 genomes]
rs34044367	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34306074	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34545597	0.86[EUR][1000 genomes]
rs34804812	0.92[EUR][1000 genomes]
rs35070876	0.94[EUR][1000 genomes]
rs35210963	0.93[EUR][1000 genomes]
rs35282866	0.91[EUR][1000 genomes]
rs35374282	0.93[EUR][1000 genomes]
rs35785621	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36031576	0.91[EUR][1000 genomes]
rs4327736	0.84[EUR][1000 genomes]
rs4425637	0.84[EUR][1000 genomes]
rs4484566	0.84[EUR][1000 genomes]
rs62427768	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62427789	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62427790	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6938142	0.83[EUR][1000 genomes]
rs71558972	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9341879	0.82[AMR][1000 genomes]
rs9341880	0.82[EUR][1000 genomes]
rs9341884	0.81[EUR][1000 genomes]
rs9344148	0.83[EUR][1000 genomes]
rs9344152	0.94[EUR][1000 genomes]
rs9344158	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9344169	0.81[EUR][1000 genomes]
rs9350925	0.82[EUR][1000 genomes]
rs9352988	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9352989	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9352993	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352995	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9352998	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353001	0.84[AMR][1000 genomes]
rs9353007	0.81[EUR][1000 genomes]
rs9361792	0.94[EUR][1000 genomes]
rs9361798	0.86[EUR][1000 genomes]
rs9361799	0.86[EUR][1000 genomes]
rs9361804	0.83[EUR][1000 genomes]
rs9361805	0.83[EUR][1000 genomes]
rs9361809	0.81[EUR][1000 genomes]
rs9361810	0.81[EUR][1000 genomes]
rs990940	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1015916	IBTK	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82071200-82074400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:82071600-82072800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:82071600-82072800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links