Variant report
| Variant | rs9353001 |
|---|---|
| Chromosome Location | chr6:82083809-82083810 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1015916 | 0.84[AMR][1000 genomes] |
| rs10943802 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11756740 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12215776 | 0.89[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13213078 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1361835 | 0.93[ASN][1000 genomes] |
| rs1419026 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17437627 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2197337 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2197339 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6938142 | 0.95[ASN][1000 genomes] |
| rs9341879 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9341880 | 0.95[ASN][1000 genomes] |
| rs9341884 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9341885 | 0.93[ASN][1000 genomes] |
| rs9344169 | 0.95[ASN][1000 genomes] |
| rs9344172 | 0.93[ASN][1000 genomes] |
| rs9350925 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9350927 | 0.88[ASN][1000 genomes] |
| rs9352998 | 0.82[AMR][1000 genomes] |
| rs9353007 | 0.89[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9361804 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9361805 | 0.89[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9361809 | 0.89[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9361810 | 0.93[ASN][1000 genomes] |
| rs9361811 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9361813 | 0.87[ASN][1000 genomes] |
| rs990940 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886328 | chr6:82036764-82120647 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82082200-82086400 | Weak transcription | Fetal Heart | heart |
| 2 | chr6:82083200-82084000 | Enhancers | Stomach Mucosa | stomach |
