Variant report
| Variant | rs9361813 |
|---|---|
| Chromosome Location | chr6:82123080-82123081 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10943802 | 0.87[ASN][1000 genomes] |
| rs11756740 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12215776 | 0.89[ASN][1000 genomes] |
| rs13213078 | 0.87[ASN][1000 genomes] |
| rs1361835 | 0.89[ASN][1000 genomes] |
| rs1419026 | 0.87[ASN][1000 genomes] |
| rs17437627 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2197337 | 0.87[ASN][1000 genomes] |
| rs2197339 | 0.89[ASN][1000 genomes] |
| rs6938142 | 0.87[ASN][1000 genomes] |
| rs9341879 | 0.89[ASN][1000 genomes] |
| rs9341880 | 0.87[ASN][1000 genomes] |
| rs9341884 | 0.87[ASN][1000 genomes] |
| rs9341885 | 0.89[ASN][1000 genomes] |
| rs9344169 | 0.87[ASN][1000 genomes] |
| rs9344172 | 0.89[ASN][1000 genomes] |
| rs9350925 | 0.87[ASN][1000 genomes] |
| rs9350927 | 0.83[ASN][1000 genomes] |
| rs9353001 | 0.87[ASN][1000 genomes] |
| rs9353007 | 0.89[ASN][1000 genomes] |
| rs9361804 | 0.87[ASN][1000 genomes] |
| rs9361805 | 0.87[ASN][1000 genomes] |
| rs9361809 | 0.89[ASN][1000 genomes] |
| rs9361810 | 0.89[ASN][1000 genomes] |
| rs9361811 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs990940 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv34899 | chr6:82090758-82161121 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | esv2757183 | chr6:82098060-82161121 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | esv2759450 | chr6:82098060-82161121 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv818440 | chr6:82120647-82133785 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82123000-82123600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
