Variant report
| Variant | rs11756740 |
|---|---|
| Chromosome Location | chr6:82109125-82109126 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10943802 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12215776 | 0.92[ASN][1000 genomes] |
| rs13213078 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1361835 | 0.92[ASN][1000 genomes] |
| rs1419026 | 0.90[ASN][1000 genomes] |
| rs17437627 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2197337 | 0.90[ASN][1000 genomes] |
| rs2197339 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6938142 | 0.90[ASN][1000 genomes] |
| rs9341879 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9341880 | 0.90[ASN][1000 genomes] |
| rs9341884 | 0.90[ASN][1000 genomes] |
| rs9341885 | 0.92[ASN][1000 genomes] |
| rs9344169 | 0.90[ASN][1000 genomes] |
| rs9344172 | 0.92[ASN][1000 genomes] |
| rs9350925 | 0.90[ASN][1000 genomes] |
| rs9350927 | 0.86[ASN][1000 genomes] |
| rs9353001 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9353007 | 0.92[ASN][1000 genomes] |
| rs9361804 | 0.90[ASN][1000 genomes] |
| rs9361805 | 0.90[ASN][1000 genomes] |
| rs9361809 | 0.92[ASN][1000 genomes] |
| rs9361810 | 0.92[ASN][1000 genomes] |
| rs9361811 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9361813 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs990940 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604087 | chr6:81792413-82326091 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032655 | chr6:81942397-82225830 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886328 | chr6:82036764-82120647 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv34899 | chr6:82090758-82161121 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | esv2757183 | chr6:82098060-82161121 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | esv2759450 | chr6:82098060-82161121 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82102600-82111400 | Weak transcription | Aorta | Aorta |
