Variant report

Variant	rs1419024
Chromosome Location	chr6:82038605-82038606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1015916	0.85[EUR][1000 genomes]
rs11755408	0.88[EUR][1000 genomes]
rs11759964	0.88[EUR][1000 genomes]
rs12196166	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12199697	0.86[EUR][1000 genomes]
rs12199755	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12202413	0.85[EUR][1000 genomes]
rs12215976	0.86[EUR][1000 genomes]
rs12216032	0.87[EUR][1000 genomes]
rs12216079	0.86[EUR][1000 genomes]
rs12216088	0.86[EUR][1000 genomes]
rs12216146	0.87[EUR][1000 genomes]
rs13197280	0.86[EUR][1000 genomes]
rs13211565	0.86[EUR][1000 genomes]
rs13219498	0.87[EUR][1000 genomes]
rs2083941	0.87[EUR][1000 genomes]
rs2096259	0.87[EUR][1000 genomes]
rs34044367	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34306074	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34545597	0.81[EUR][1000 genomes]
rs34804812	0.85[EUR][1000 genomes]
rs35070876	0.87[EUR][1000 genomes]
rs35210963	0.87[EUR][1000 genomes]
rs35282866	0.84[EUR][1000 genomes]
rs35374282	0.87[EUR][1000 genomes]
rs35785621	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36031576	0.84[EUR][1000 genomes]
rs62427768	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62427789	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62427790	0.84[EUR][1000 genomes]
rs71558972	0.85[EUR][1000 genomes]
rs9344148	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9344152	0.88[EUR][1000 genomes]
rs9344158	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352983	0.81[EUR][1000 genomes]
rs9352988	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352989	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352993	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352995	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352998	0.85[EUR][1000 genomes]
rs9361792	0.88[EUR][1000 genomes]
rs9361798	0.81[EUR][1000 genomes]
rs9361799	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034440	chr6:82002417-82044834	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82037400-82040800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:82038000-82041000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:82038400-82041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82038600-82040800	Weak transcription	Osteobl	bone

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