Variant report

Variant	rs10947078
Chromosome Location	chr6:30428466-30428467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30423219..30426193-chr6:30426415..30429085,2	K562	blood:
2	chr6:30414165..30416379-chr6:30427535..30430308,2	MCF-7	breast:
3	chr6:30428115..30430793-chr6:30537147..30539605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204574	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11752542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753256	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11756630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963959	0.82[EUR][1000 genomes]
rs11968858	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12180542	0.81[EUR][1000 genomes]
rs17411284	0.82[EUR][1000 genomes]
rs17411410	0.82[EUR][1000 genomes]
rs17411480	0.82[EUR][1000 genomes]
rs2077572	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2428536	0.82[EUR][1000 genomes]
rs34090585	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34101875	0.81[EUR][1000 genomes]
rs34163258	0.81[EUR][1000 genomes]
rs34186179	0.81[EUR][1000 genomes]
rs34335619	0.81[EUR][1000 genomes]
rs34340584	0.81[EUR][1000 genomes]
rs34435337	0.81[EUR][1000 genomes]
rs34551551	0.81[EUR][1000 genomes]
rs34552114	0.82[EUR][1000 genomes]
rs34708826	0.82[EUR][1000 genomes]
rs34727270	0.81[EUR][1000 genomes]
rs34762601	0.81[EUR][1000 genomes]
rs34960122	0.82[EUR][1000 genomes]
rs35227387	0.81[EUR][1000 genomes]
rs35230915	0.81[EUR][1000 genomes]
rs35235619	0.82[EUR][1000 genomes]
rs35268644	0.81[EUR][1000 genomes]
rs35328743	0.82[EUR][1000 genomes]
rs35365548	0.81[EUR][1000 genomes]
rs35407515	0.82[EUR][1000 genomes]
rs35698032	0.82[EUR][1000 genomes]
rs36034295	0.83[EUR][1000 genomes]
rs36093514	0.81[EUR][1000 genomes]
rs41265595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4947282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4959047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4959048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4959050	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57857421	0.82[EUR][1000 genomes]
rs6902129	0.82[EUR][1000 genomes]
rs6902374	0.82[EUR][1000 genomes]
rs6902400	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902914	0.82[EUR][1000 genomes]
rs6924512	0.82[EUR][1000 genomes]
rs73727374	0.81[EUR][1000 genomes]
rs9261844	0.82[EUR][1000 genomes]
rs9261893	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295870	0.82[EUR][1000 genomes]
rs9295872	0.82[EUR][1000 genomes]
rs9295874	0.82[EUR][1000 genomes]
rs9295876	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295877	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295879	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295881	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295882	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295885	0.82[EUR][1000 genomes]
rs9295887	0.82[EUR][1000 genomes]
rs9295888	0.82[EUR][1000 genomes]
rs9295889	0.81[EUR][1000 genomes]
rs9295893	0.82[EUR][1000 genomes]
rs9295894	0.82[EUR][1000 genomes]
rs9461608	0.82[EUR][1000 genomes]
rs9461609	0.82[EUR][1000 genomes]
rs9461610	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9461611	0.82[EUR][1000 genomes]
rs9468737	0.82[EUR][1000 genomes]
rs9468758	0.82[EUR][1000 genomes]
rs9468759	0.81[EUR][1000 genomes]
rs9468760	0.82[EUR][1000 genomes]
rs9468768	0.82[EUR][1000 genomes]
rs9468771	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9468773	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468774	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9501020	0.81[EUR][1000 genomes]
rs9501327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9501329	0.82[EUR][1000 genomes]
rs9501335	0.82[EUR][1000 genomes]
rs9501336	0.82[EUR][1000 genomes]
rs9501466	0.82[EUR][1000 genomes]
rs9501468	0.82[EUR][1000 genomes]
rs9501469	0.82[EUR][1000 genomes]
rs9501471	0.82[EUR][1000 genomes]
rs9501472	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9501474	0.82[EUR][1000 genomes]
rs9885617	0.82[EUR][1000 genomes]
rs9885618	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885620	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9885622	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885815	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9918350	0.82[EUR][1000 genomes]
rs9918389	0.81[EUR][1000 genomes]
rs9918488	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3336846	chr6:30420111-30432946	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30419200-30428600	Weak transcription	Pancreas	Pancrea
2	chr6:30427400-30428600	Bivalent/Poised TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links