Variant report

Variant	rs9501327
Chromosome Location	chr6:30421127-30421128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30421088..30422240-chr6:30449570..30450644,10	MCF-7	breast:
2	chr6:30420842..30422110-chr6:30449567..30450229,10	K562	blood:
3	chr6:30418502..30422305-chr6:30429667..30432220,3	MCF-7	breast:
4	chr6:30420870..30422111-chr6:30449570..30450171,8	MCF-7	breast:
5	chr6:30292876..30295211-chr6:30419006..30421683,2	K562	blood:
6	chr6:30293711..30295719-chr6:30419664..30421683,2	K562	blood:
7	chr6:30325158..30326032-chr6:30421070..30422057,4	K562	blood:
8	chr6:30098561..30099505-chr6:30421018..30421961,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10947078	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11752542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11753256	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11756630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968858	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2077572	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2077573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34090585	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36036203	0.82[EUR][1000 genomes]
rs41265595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902400	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9261893	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9295876	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9295877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461610	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9468771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468773	0.80[AMR][1000 genomes]
rs9468774	0.80[AMR][1000 genomes]
rs9501328	0.83[EUR][1000 genomes]
rs9501472	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885618	0.80[AMR][1000 genomes]
rs9885620	0.80[AMR][1000 genomes]
rs9885621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885622	0.80[AMR][1000 genomes]
rs9885815	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3336846	chr6:30420111-30432946	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30417200-30421600	Bivalent Enhancer	Fetal Thymus	thymus
2	chr6:30418400-30421600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr6:30418400-30421600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
4	chr6:30419200-30421200	Weak transcription	Right Ventricle	heart
5	chr6:30419200-30421400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:30419200-30421400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
7	chr6:30419200-30421400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr6:30419200-30421600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
9	chr6:30419200-30421800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:30419200-30421800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:30419200-30428600	Weak transcription	Pancreas	Pancrea
12	chr6:30419400-30421200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr6:30419400-30421400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:30419400-30421600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:30419400-30421800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr6:30419600-30421200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr6:30419600-30421200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
18	chr6:30419600-30421400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr6:30419600-30421600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:30419800-30421200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:30419800-30421200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr6:30419800-30421400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
23	chr6:30420400-30421200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:30420400-30421400	Bivalent Enhancer	Fetal Heart	heart
25	chr6:30420600-30421600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:30420800-30421200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
27	chr6:30420800-30421400	Bivalent Enhancer	Adipose Nuclei	Adipose
28	chr6:30420800-30421600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
29	chr6:30420800-30421600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
30	chr6:30420800-30421800	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr6:30420800-30421800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:30421000-30421200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
33	chr6:30421000-30421200	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
34	chr6:30421000-30421200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:30421000-30421200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:30421000-30421400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:30421000-30421400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
38	chr6:30421000-30421600	Bivalent Enhancer	Fetal Intestine Small	intestine
39	chr6:30421000-30421600	Bivalent Enhancer	Spleen	Spleen
40	chr6:30421000-30421800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr6:30421000-30421800	Bivalent Enhancer	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links