Variant report

Variant	rs9261893
Chromosome Location	chr6:30388936-30388937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30380952..30384667-chr6:30386673..30389385,3	K562	blood:
2	chr6:30364310..30365862-chr6:30386384..30388997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226577	Chromatin interaction

Extended variants
information (count: 184 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10947078	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11752542	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11753256	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11756630	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11963959	0.82[EUR][1000 genomes]
rs11968858	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1548512	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548513	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548514	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1548515	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1573293	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1573294	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17411284	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17411410	0.82[EUR][1000 genomes]
rs17411480	0.82[EUR][1000 genomes]
rs2023371	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2023372	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2077572	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2077573	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2078677	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2428536	0.82[EUR][1000 genomes]
rs28534512	0.83[AMR][1000 genomes]
rs34090585	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34101875	0.81[EUR][1000 genomes]
rs34186179	0.81[EUR][1000 genomes]
rs34340584	0.81[EUR][1000 genomes]
rs34435337	0.81[EUR][1000 genomes]
rs34551551	0.81[EUR][1000 genomes]
rs34552114	0.82[EUR][1000 genomes]
rs34708826	0.82[EUR][1000 genomes]
rs34727270	0.81[EUR][1000 genomes]
rs34762601	0.81[EUR][1000 genomes]
rs34960122	0.82[EUR][1000 genomes]
rs35230915	0.81[EUR][1000 genomes]
rs35235619	0.82[EUR][1000 genomes]
rs35268644	0.81[EUR][1000 genomes]
rs35328743	0.82[EUR][1000 genomes]
rs35365548	0.81[EUR][1000 genomes]
rs35407515	0.82[EUR][1000 genomes]
rs35698032	0.82[EUR][1000 genomes]
rs36034295	0.82[EUR][1000 genomes]
rs36093514	0.82[EUR][1000 genomes]
rs41265595	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41265603	0.81[AMR][1000 genomes]
rs4947282	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4959047	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4959048	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4959050	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57857421	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6902129	0.82[EUR][1000 genomes]
rs6902374	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6902400	0.85[EUR][1000 genomes]
rs6902914	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6924512	0.82[EUR][1000 genomes]
rs9261746	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261748	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261755	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261756	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261757	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261758	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261759	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261760	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261761	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261762	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261764	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261765	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261766	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261767	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261768	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261769	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261770	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261771	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261772	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9261773	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9261776	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261777	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261778	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261779	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261780	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261781	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261783	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261784	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261817	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261820	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261821	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261825	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261826	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261827	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261828	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9261833	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261834	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261843	0.81[EUR][1000 genomes]
rs9261844	0.89[EUR][1000 genomes]
rs9261846	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261849	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261850	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261853	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261854	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261855	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261856	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261857	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261858	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261859	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261860	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261861	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261862	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261863	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261866	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261867	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261869	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261871	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261872	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261873	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261874	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261875	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9261876	0.81[EUR][1000 genomes]
rs9261878	0.83[AMR][1000 genomes]
rs9261884	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261885	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9261889	0.83[AMR][1000 genomes]
rs9261890	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261891	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261892	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261894	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9261895	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9295870	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9295872	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9295874	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9295876	0.84[AMR][1000 genomes]
rs9295877	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295878	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295879	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295880	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295881	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295882	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295883	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9295884	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9295885	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9295887	0.82[EUR][1000 genomes]
rs9295888	0.82[EUR][1000 genomes]
rs9295893	0.82[EUR][1000 genomes]
rs9295894	0.82[EUR][1000 genomes]
rs9461608	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9461609	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9461610	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9461611	0.82[EUR][1000 genomes]
rs9468737	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468740	0.83[AMR][1000 genomes]
rs9468758	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468759	0.83[AMR][1000 genomes]
rs9468760	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468768	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468771	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9468773	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9468774	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9501020	0.81[EUR][1000 genomes]
rs9501327	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9501329	0.82[EUR][1000 genomes]
rs9501335	0.82[EUR][1000 genomes]
rs9501336	0.82[EUR][1000 genomes]
rs9501466	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9501468	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9501469	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9501471	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9501472	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9501474	0.82[EUR][1000 genomes]
rs9885617	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885618	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885620	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885621	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9885622	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9885815	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9918350	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9918389	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9918488	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv884063	chr6:30366100-30397219	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv884064	chr6:30375290-30396173	Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
7	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
8	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv981054	chr6:30387468-30392258	Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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