Variant report

Variant	rs10947534
Chromosome Location	chr6:34963678-34963679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10807143	0.97[ASN][1000 genomes]
rs10947533	0.91[ASN][1000 genomes]
rs10947535	0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11755713	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16895035	0.85[JPT][hapmap]
rs16895354	0.93[JPT][hapmap]
rs1737724	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2030611	0.93[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2395601	0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2395602	0.87[ASN][1000 genomes]
rs3734258	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734259	0.93[JPT][hapmap]
rs3756859	0.93[JPT][hapmap]
rs3800443	0.93[JPT][hapmap]
rs3800448	0.93[JPT][hapmap]
rs3800450	0.92[JPT][hapmap]
rs3800452	0.93[JPT][hapmap]
rs3800453	0.85[JPT][hapmap]
rs3822923	0.85[JPT][hapmap]
rs56140217	0.81[ASN][1000 genomes]
rs56248791	0.98[ASN][1000 genomes]
rs6457799	0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913108	0.93[JPT][hapmap]
rs6918498	1.00[JPT][hapmap]
rs6941065	0.93[JPT][hapmap]
rs7740148	0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7751820	0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7752468	0.93[JPT][hapmap]
rs847842	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs847844	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs847845	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs847861	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs847862	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9380465	0.93[JPT][hapmap]
rs9380466	0.93[JPT][hapmap]
rs9380467	0.93[JPT][hapmap]
rs9380468	0.93[JPT][hapmap]
rs9380470	0.93[JPT][hapmap]
rs9380476	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9380480	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9380481	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9380491	0.85[JPT][hapmap]
rs9784889	0.93[JPT][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
3	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:34939400-34978200	Weak transcription	Psoas Muscle	Psoas
5	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:34944600-34967200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:34945200-34967200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:34947800-34967000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:34948600-34967200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:34948800-34964200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:34949800-34966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:34950600-34964200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr6:34955000-34973600	Weak transcription	Stomach Mucosa	stomach
14	chr6:34955200-34964600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:34955400-34964000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:34955400-34967600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:34955400-34967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:34955600-34964400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:34955600-34969600	Weak transcription	Fetal Heart	heart
20	chr6:34956800-34967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:34957000-34963800	Strong transcription	Left Ventricle	heart
22	chr6:34957000-34965600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:34957200-34967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:34959200-34979000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:34959800-34964800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:34960000-34963800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:34960200-34979200	Weak transcription	HUVEC	blood vessel
28	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:34960400-34966600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:34960800-34963800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr6:34960800-34964200	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:34960800-34965600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:34960800-34967600	Weak transcription	K562	blood
34	chr6:34961000-34985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:34961200-34964200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:34961200-34983400	Weak transcription	Fetal Kidney	kidney
37	chr6:34961600-34982200	Weak transcription	Right Ventricle	heart
38	chr6:34962200-34964000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:34962200-34982200	Weak transcription	Hela-S3	cervix
40	chr6:34962200-34984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:34962400-34964000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr6:34962600-34964200	Weak transcription	Fetal Brain Male	brain
43	chr6:34962600-34965600	Weak transcription	HSMM	muscle
44	chr6:34962800-34964800	Weak transcription	A549	lung
45	chr6:34962800-34965600	Weak transcription	Fetal Intestine Small	intestine
46	chr6:34962800-34970400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr6:34962800-34978800	Weak transcription	Fetal Lung	lung
48	chr6:34962800-34983600	Weak transcription	Osteobl	bone
49	chr6:34962800-34985200	Weak transcription	Brain Germinal Matrix	brain
50	chr6:34963000-34963800	Weak transcription	NHLF	lung

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