Variant report

Variant	rs9784889
Chromosome Location	chr6:34966047-34966048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10807143	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947533	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10947534	0.93[JPT][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10947535	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755713	0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs16895035	0.87[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs16895354	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1737724	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2030611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395601	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2395602	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3734258	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3734259	0.87[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs3756859	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs3777750	0.88[JPT][hapmap]
rs3800443	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3800448	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3800450	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3800452	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3800453	0.87[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs3822923	0.93[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs56140217	0.84[ASN][1000 genomes]
rs56248791	0.95[ASN][1000 genomes]
rs6457799	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6913108	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs6918498	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs6941065	0.87[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs7740148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7751820	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7752468	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs847844	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[ASN][1000 genomes]
rs847845	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs847861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs847862	0.93[ASW][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9380465	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9380466	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs9380467	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs9380468	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9380470	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs9380476	0.93[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs9380480	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9380481	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
3	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:34939400-34978200	Weak transcription	Psoas Muscle	Psoas
5	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:34944600-34967200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:34945200-34967200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:34947800-34967000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:34948600-34967200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:34949800-34966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:34955000-34973600	Weak transcription	Stomach Mucosa	stomach
12	chr6:34955400-34967600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:34955400-34967600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:34955600-34969600	Weak transcription	Fetal Heart	heart
15	chr6:34956800-34967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:34957200-34967000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:34959200-34979000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:34960200-34979200	Weak transcription	HUVEC	blood vessel
19	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:34960400-34966600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:34960800-34967600	Weak transcription	K562	blood
22	chr6:34961000-34985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:34961200-34983400	Weak transcription	Fetal Kidney	kidney
24	chr6:34961600-34982200	Weak transcription	Right Ventricle	heart
25	chr6:34962200-34982200	Weak transcription	Hela-S3	cervix
26	chr6:34962200-34984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:34962800-34970400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:34962800-34978800	Weak transcription	Fetal Lung	lung
29	chr6:34962800-34983600	Weak transcription	Osteobl	bone
30	chr6:34962800-34985200	Weak transcription	Brain Germinal Matrix	brain
31	chr6:34963000-34966400	Weak transcription	Spleen	Spleen
32	chr6:34963000-34966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:34963000-34967400	Weak transcription	HMEC	breast
34	chr6:34963000-34968600	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:34963000-34968800	Weak transcription	Gastric	stomach
36	chr6:34963000-34969400	Weak transcription	Esophagus	oesophagus
37	chr6:34963000-34969600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:34963000-34969800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:34963000-34970000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:34963000-34970000	Weak transcription	HSMMtube	muscle
41	chr6:34963000-34970400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:34963000-34975400	Weak transcription	Brain Angular Gyrus	brain
43	chr6:34963000-34976000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:34963000-34976000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:34963000-34978000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:34963000-34979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:34963000-34982200	Weak transcription	Aorta	Aorta
48	chr6:34963000-34982200	Weak transcription	Pancreas	Pancrea
49	chr6:34963000-34982400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:34963000-34982400	Weak transcription	Fetal Stomach	stomach

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