Variant report

Variant	rs1737724
Chromosome Location	chr6:34930046-34930047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34926256..34928319-chr6:34929581..34931130,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10807143	0.81[ASN][1000 genomes]
rs10947533	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10947534	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs10947535	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11755713	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13204222	0.80[ASN][1000 genomes]
rs13215944	0.82[ASN][1000 genomes]
rs16895035	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs16895354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1883639	0.82[ASN][1000 genomes]
rs2030611	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2395601	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs34006431	0.82[ASN][1000 genomes]
rs35057781	0.83[ASN][1000 genomes]
rs35499928	0.82[ASN][1000 genomes]
rs35760768	0.82[ASN][1000 genomes]
rs35786848	0.82[ASN][1000 genomes]
rs3734258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3734259	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3756859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3777750	0.88[JPT][hapmap]
rs3800443	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3800448	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3800450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3800452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3800453	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs3822923	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4646919	0.80[ASN][1000 genomes]
rs4646920	0.81[ASN][1000 genomes]
rs4646922	0.80[ASN][1000 genomes]
rs56140217	0.92[ASN][1000 genomes]
rs56248791	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57955553	0.82[ASN][1000 genomes]
rs6457799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6907427	0.82[ASN][1000 genomes]
rs6912229	0.87[ASN][1000 genomes]
rs6913108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6918498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs6927009	0.82[ASN][1000 genomes]
rs6941065	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73745049	0.83[ASN][1000 genomes]
rs73745050	0.83[ASN][1000 genomes]
rs7740148	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7751820	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7752468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7755801	0.82[ASN][1000 genomes]
rs7756122	0.82[ASN][1000 genomes]
rs847842	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs847845	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs847861	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs847862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs861878	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9357187	0.81[ASN][1000 genomes]
rs9368835	0.81[ASN][1000 genomes]
rs9368837	0.81[ASN][1000 genomes]
rs9380465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9380466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9380467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9380468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9380470	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9380476	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9394254	0.82[ASN][1000 genomes]
rs9394255	0.82[ASN][1000 genomes]
rs9784889	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:34896000-34934600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:34904600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:34907400-34937600	Weak transcription	Dnd41	blood
5	chr6:34918600-34938400	Weak transcription	Thymus	Thymus
6	chr6:34919800-34937200	Weak transcription	NHEK	skin
7	chr6:34920000-34937400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:34920000-34937400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
10	chr6:34921200-34937600	Weak transcription	Aorta	Aorta
11	chr6:34921200-34949400	Weak transcription	Esophagus	oesophagus
12	chr6:34921400-34937400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:34921600-34937600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:34921600-34937800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:34921600-34949400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:34921800-34938800	Weak transcription	HMEC	breast
17	chr6:34922000-34953800	Weak transcription	Hela-S3	cervix
18	chr6:34922200-34932200	Weak transcription	Osteobl	bone
19	chr6:34922200-34937400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:34922600-34937400	Weak transcription	HepG2	liver
21	chr6:34922600-34940200	Weak transcription	A549	lung
22	chr6:34922600-34940800	Weak transcription	Stomach Mucosa	stomach
23	chr6:34922800-34937400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:34922800-34950200	Weak transcription	Brain Germinal Matrix	brain
25	chr6:34923600-34936800	Weak transcription	K562	blood
26	chr6:34923800-34937400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:34925000-34937400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:34925200-34937200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:34925600-34932000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:34925800-34937800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:34926000-34932200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:34926000-34937600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:34926000-34937600	Weak transcription	Fetal Lung	lung
35	chr6:34926000-34937600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:34926600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:34926600-34937600	Weak transcription	Liver	Liver
38	chr6:34926600-34937800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:34926800-34932200	Weak transcription	Psoas Muscle	Psoas
40	chr6:34926800-34937800	Weak transcription	Brain Angular Gyrus	brain
41	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
42	chr6:34927000-34937200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:34927000-34937400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:34927000-34937600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:34927000-34937600	Weak transcription	Fetal Intestine Large	intestine
46	chr6:34927000-34937800	Weak transcription	Gastric	stomach
47	chr6:34927200-34932200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:34927200-34934800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr6:34927200-34937400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:34927200-34937600	Weak transcription	Rectal Mucosa Donor 31	rectum

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