Variant report

Variant	rs10947567
Chromosome Location	chr6:11791762-11791763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11752110	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142896	0.88[ASN][1000 genomes]
rs4711430	0.88[ASN][1000 genomes]
rs4711431	0.90[AMR][1000 genomes]
rs4713922	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713925	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713926	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296163	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv12435	chr6:11786468-11791797	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv970076	chr6:11789794-11794413	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11788800-11793000	Weak transcription	GM12878-XiMat	blood
2	chr6:11789600-11791800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:11790400-11791800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:11790400-11792000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11790400-11792000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:11790400-11792400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:11790400-11793400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:11790400-11793400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:11790400-11793600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:11790600-11791800	Enhancers	Lung	lung
11	chr6:11790600-11792000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:11790600-11792000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:11790600-11792000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:11790600-11792800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:11790600-11793600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:11790800-11791800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:11790800-11791800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:11790800-11793600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:11790800-11793600	Enhancers	HMEC	breast
20	chr6:11791200-11792000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:11791200-11794000	Weak transcription	Fetal Intestine Small	intestine
22	chr6:11791400-11792000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:11791400-11792000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:11791400-11792000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:11791400-11792000	Enhancers	NHEK	skin
26	chr6:11791400-11792800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:11791600-11791800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr6:11791600-11792000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:11791600-11792000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:11791600-11792400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:11791600-11794400	Weak transcription	Placenta	Placenta
32	chr6:11791600-11795400	Weak transcription	Placenta Amnion	Placenta Amnion

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