Variant report

Variant	rs11752110
Chromosome Location	chr6:11791351-11791352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10947567	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2142896	0.86[ASN][1000 genomes]
rs4711430	0.91[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4711431	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes]
rs4711432	0.84[CEU][hapmap]
rs4713922	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4713925	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713926	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713927	0.84[CEU][hapmap]
rs9296163	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9462130	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv12435	chr6:11786468-11791797	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv970076	chr6:11789794-11794413	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11774000-11791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:11786000-11791400	Weak transcription	NHEK	skin
3	chr6:11787000-11791400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:11788800-11793000	Weak transcription	GM12878-XiMat	blood
5	chr6:11789600-11791800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:11790400-11791800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:11790400-11792000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:11790400-11792000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:11790400-11792400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:11790400-11793400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:11790400-11793400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:11790400-11793600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:11790600-11791800	Enhancers	Lung	lung
14	chr6:11790600-11792000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:11790600-11792000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:11790600-11792000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:11790600-11792800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:11790600-11793600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:11790800-11791400	Enhancers	Fetal Intestine Large	intestine
20	chr6:11790800-11791600	Enhancers	Placenta	Placenta
21	chr6:11790800-11791600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:11790800-11791800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:11790800-11791800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:11790800-11793600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:11790800-11793600	Enhancers	HMEC	breast
26	chr6:11791200-11791600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:11791200-11792000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:11791200-11794000	Weak transcription	Fetal Intestine Small	intestine

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