Variant report

Variant	rs2142896
Chromosome Location	chr6:11796639-11796640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11774814..11777232-chr6:11795284..11797623,2	K562	blood:
2	chr6:11796589..11798464-chr6:12010178..12011844,2	K562	blood:
3	chr6:11783514..11786582-chr6:11793568..11797099,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10947567	0.88[ASN][1000 genomes]
rs11752110	0.86[ASN][1000 genomes]
rs4711430	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4711431	0.83[ASN][1000 genomes]
rs4713922	0.94[ASN][1000 genomes]
rs4713925	0.93[ASN][1000 genomes]
rs9296163	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11791800-11803400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:11792000-11804800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11793400-11799000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:11793400-11803400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:11793400-11804800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:11793600-11798400	Weak transcription	HMEC	breast
7	chr6:11793600-11803400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:11793600-11804800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:11794400-11799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:11794800-11802600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:11795400-11797000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:11795400-11798600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:11795600-11797800	Weak transcription	Fetal Stomach	stomach
14	chr6:11795600-11798400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:11795600-11802200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:11795800-11797400	Weak transcription	Fetal Kidney	kidney
17	chr6:11795800-11798000	Enhancers	Ovary	ovary
18	chr6:11795800-11799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:11796000-11798200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:11796000-11798400	Weak transcription	NHDF-Ad	bronchial
21	chr6:11796000-11798600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:11796200-11796800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:11796200-11797800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:11796400-11802600	Weak transcription	Hela-S3	cervix
25	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
26	chr6:11796600-11804400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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