Variant report
| Variant | rs10952615 |
|---|---|
| Chromosome Location | chr7:145034948-145034949 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10952614 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10952616 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11976907 | 0.86[EUR][1000 genomes] |
| rs12112673 | 0.86[EUR][1000 genomes] |
| rs12673648 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12673691 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17805910 | 0.87[EUR][1000 genomes] |
| rs17806163 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2190081 | 0.86[EUR][1000 genomes] |
| rs4726756 | 0.87[EUR][1000 genomes] |
| rs57132884 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs57524854 | 0.84[EUR][1000 genomes] |
| rs59098873 | 0.86[EUR][1000 genomes] |
| rs62495645 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62495646 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62495647 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62495920 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62495921 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62495922 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62495923 | 0.86[EUR][1000 genomes] |
| rs67346243 | 0.85[EUR][1000 genomes] |
| rs6972400 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031071 | chr7:144318082-145125392 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv539169 | chr7:144318082-145125392 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:145034800-145036400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
