Variant report

Variant	rs12673648
Chromosome Location	chr7:145010364-145010365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1002527	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10952614	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10952615	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10952616	0.84[EUR][1000 genomes]
rs11765651	0.80[EUR][1000 genomes]
rs11976907	0.82[EUR][1000 genomes]
rs12112673	0.82[EUR][1000 genomes]
rs12673691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12673814	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17805910	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17806163	0.88[AMR][1000 genomes]
rs2107891	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2190081	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2371963	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4726756	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57132884	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57524854	0.80[EUR][1000 genomes]
rs59098873	0.82[EUR][1000 genomes]
rs62495645	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62495646	0.84[EUR][1000 genomes]
rs62495647	0.84[EUR][1000 genomes]
rs62495920	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62495921	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62495922	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62495923	0.83[EUR][1000 genomes]
rs67346243	0.82[EUR][1000 genomes]
rs6972400	0.83[EUR][1000 genomes]
rs7779709	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7779731	0.81[EUR][1000 genomes]
rs7780174	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7780968	0.83[EUR][1000 genomes]
rs7799717	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031071	chr7:144318082-145125392	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv539169	chr7:144318082-145125392	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026420	chr7:144902627-145020612	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv971561	chr7:144969351-145014828	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145009600-145011600	Enhancers	Fetal Lung	lung
2	chr7:145010000-145011000	Enhancers	Adipose Nuclei	Adipose

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