Variant report

Variant	rs12112673
Chromosome Location	chr7:145033133-145033134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1002527	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10255844	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10271795	0.95[ASN][1000 genomes]
rs10952614	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10952615	0.86[EUR][1000 genomes]
rs10952616	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765651	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11976907	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112682	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12673648	0.82[EUR][1000 genomes]
rs12673691	0.82[EUR][1000 genomes]
rs12673814	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468374	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1468375	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17805910	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17806163	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1859565	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2023995	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107891	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190081	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371963	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4726755	0.97[ASN][1000 genomes]
rs4726756	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726758	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs57132884	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57524854	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59098873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62495645	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62495646	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62495647	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62495920	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62495921	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62495922	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62495923	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464672	0.91[ASN][1000 genomes]
rs67346243	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972400	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779709	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7779731	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7780174	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7780968	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790233	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7792751	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7799717	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031071	chr7:144318082-145125392	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv539169	chr7:144318082-145125392	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145021600-145034600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links