Variant report

Variant	rs10954065
Chromosome Location	chr7:124672253-124672254
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11532793	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11534064	0.82[ASN][1000 genomes]
rs11536526	0.84[ASN][1000 genomes]
rs1383748	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1568883	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17327014	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17327715	0.82[ASN][1000 genomes]
rs2054586	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4142718	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55890146	0.84[ASN][1000 genomes]
rs56069273	0.82[ASN][1000 genomes]
rs56216989	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56269941	0.82[ASN][1000 genomes]
rs58618031	0.80[ASN][1000 genomes]
rs59379598	0.82[ASN][1000 genomes]
rs59673207	0.82[ASN][1000 genomes]
rs62478792	0.82[ASN][1000 genomes]
rs66756015	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66852389	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67277928	0.82[ASN][1000 genomes]
rs67607629	0.82[ASN][1000 genomes]
rs67817822	0.82[ASN][1000 genomes]
rs67870530	0.80[ASN][1000 genomes]
rs6945199	0.81[ASN][1000 genomes]
rs73225498	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9640831	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv1016655	chr7:124575684-124684279	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1032336	chr7:124590688-124673373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2761363	chr7:124591433-124673373	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1034654	chr7:124591433-124673373	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv608343	chr7:124610346-124674022	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124672000-124672400	Weak transcription	Liver	Liver

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