Variant report

Variant	rs10956190
Chromosome Location	chr8:125607206-125607207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125605731..125607581-chr8:125735892..125738512,2	MCF-7	breast:
2	chr8:125549390..125552264-chr8:125603612..125607617,4	MCF-7	breast:
3	chr8:125606519..125608601-chr8:125616738..125618798,2	MCF-7	breast:
4	chr8:125607119..125608683-chr8:125967904..125969529,2	K562	blood:
5	chr8:125605123..125607316-chr8:125865948..125867968,2	MCF-7	breast:
6	chr8:125607033..125612930-chr8:125826274..125829090,6	K562	blood:
7	chr3:184113391..184114998-chr8:125605420..125608346,2	MCF-7	breast:
8	chr8:125606789..125608320-chr8:125623030..125625439,2	MCF-7	breast:
9	chr8:125605911..125607972-chr8:125612468..125615262,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147684	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000147687	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13257822	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857947	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4007926	0.96[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4870906	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4870907	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4871509	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871510	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62530664	0.82[AMR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125574400-125609400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
3	chr8:125585400-125609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
5	chr8:125596400-125609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:125602000-125620400	Weak transcription	HMEC	breast
7	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:125603200-125607800	Weak transcription	NHEK	skin
9	chr8:125603400-125609200	Weak transcription	Fetal Intestine Large	intestine
10	chr8:125603400-125612000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:125603400-125612600	Weak transcription	NHLF	lung
12	chr8:125603400-125612800	Weak transcription	Gastric	stomach
13	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
15	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:125603600-125607600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:125603600-125609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:125603600-125609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:125603600-125611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:125603600-125612000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:125604400-125608400	Enhancers	Liver	Liver
22	chr8:125604400-125609000	Enhancers	Primary T cells from cord blood	blood
23	chr8:125605000-125607400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr8:125605000-125607800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:125605000-125608000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr8:125605000-125608200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:125605000-125608400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:125605000-125608600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr8:125605000-125608600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr8:125605000-125608800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:125605000-125609000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr8:125605000-125609000	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr8:125605000-125609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:125605000-125609200	Enhancers	Brain Germinal Matrix	brain
35	chr8:125605000-125609200	Enhancers	Brain Hippocampus Middle	brain
36	chr8:125605000-125609400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:125605000-125609400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:125605000-125610200	Enhancers	Right Atrium	heart
39	chr8:125605000-125610800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr8:125605000-125613800	Enhancers	Fetal Muscle Leg	muscle
41	chr8:125605000-125614200	Enhancers	Placenta	Placenta
42	chr8:125605000-125615800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:125605200-125607400	Enhancers	Stomach Smooth Muscle	stomach
44	chr8:125605200-125607600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:125605200-125608200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr8:125605200-125609400	Enhancers	Primary B cells from cord blood	blood
47	chr8:125605200-125609400	Enhancers	Primary B cells from peripheral blood	blood
48	chr8:125605400-125607600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr8:125605400-125607600	Enhancers	Fetal Heart	heart
50	chr8:125605400-125608000	Enhancers	Monocytes-CD14+_RO01746	blood

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