Variant report

Variant	rs4871509
Chromosome Location	chr8:125605941-125605942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125603929..125607098-chr8:125608646..125611096,3	MCF-7	breast:
2	chr8:125561468..125564818-chr8:125602459..125606146,3	K562	blood:
3	chr8:125605731..125607581-chr8:125735892..125738512,2	MCF-7	breast:
4	chr8:125549390..125552264-chr8:125603612..125607617,4	MCF-7	breast:
5	chr8:125602405..125607045-chr8:125825769..125829252,7	K562	blood:
6	chr8:125605123..125607316-chr8:125865948..125867968,2	MCF-7	breast:
7	chr8:125603844..125606366-chr8:125762681..125764828,2	MCF-7	breast:
8	chr3:184113391..184114998-chr8:125605420..125608346,2	MCF-7	breast:
9	chr8:125604579..125606037-chr8:125936216..125937900,23	MCF-7	breast:
10	chr8:125605311..125606257-chr8:125646877..125647660,2	MCF-7	breast:
11	chr8:125602831..125606527-chr8:125825901..125829225,5	K562	blood:
12	chr8:125604840..125605996-chr8:125659534..125660716,13	MCF-7	breast:
13	chr8:125605911..125607972-chr8:125612468..125615262,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147684	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000147687	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10956190	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13257822	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3857947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4007926	0.96[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870906	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4870907	0.92[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4871510	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125574400-125609400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
3	chr8:125585400-125609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:125593600-125606800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
6	chr8:125596400-125609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:125597200-125607000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:125602000-125620400	Weak transcription	HMEC	breast
9	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:125603200-125606600	Weak transcription	Lung	lung
11	chr8:125603200-125607800	Weak transcription	NHEK	skin
12	chr8:125603400-125606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:125603400-125606400	Weak transcription	Fetal Stomach	stomach
14	chr8:125603400-125609200	Weak transcription	Fetal Intestine Large	intestine
15	chr8:125603400-125612000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:125603400-125612600	Weak transcription	NHLF	lung
17	chr8:125603400-125612800	Weak transcription	Gastric	stomach
18	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
20	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:125603600-125606400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:125603600-125607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:125603600-125607600	Weak transcription	Fetal Intestine Small	intestine
24	chr8:125603600-125609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:125603600-125609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:125603600-125611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:125603600-125612000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:125604400-125606000	Enhancers	K562	blood
29	chr8:125604400-125606400	Enhancers	Fetal Brain Female	brain
30	chr8:125604400-125607000	Enhancers	Fetal Thymus	thymus
31	chr8:125604400-125608400	Enhancers	Liver	Liver
32	chr8:125604400-125609000	Enhancers	Primary T cells from cord blood	blood
33	chr8:125604600-125607000	Enhancers	Thymus	Thymus
34	chr8:125605000-125606000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:125605000-125606000	Enhancers	Colon Smooth Muscle	Colon
36	chr8:125605000-125606400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr8:125605000-125606600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:125605000-125606600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:125605000-125606800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr8:125605000-125606800	Enhancers	Dnd41	blood
41	chr8:125605000-125606800	Enhancers	HUVEC	blood vessel
42	chr8:125605000-125607000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr8:125605000-125607000	Enhancers	Brain Substantia Nigra	brain
44	chr8:125605000-125607400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr8:125605000-125607800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr8:125605000-125608000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr8:125605000-125608200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:125605000-125608400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr8:125605000-125608600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr8:125605000-125608600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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