Variant report

Variant	rs4870906
Chromosome Location	chr8:125600917-125600918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125504278..125506090-chr8:125598292..125600980,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10956190	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs11776528	1.00[YRI][hapmap]
rs13257822	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs3857947	0.86[JPT][hapmap]
rs4007926	0.89[CEU][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4870907	0.85[CEU][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4871509	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs4871510	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs6415485	0.83[ASN][1000 genomes]
rs7010757	0.82[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7835397	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024804	chr8:125575803-125600950	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025014	chr8:125578314-125600950	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3397815	chr8:125599381-125603392	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3490340	chr8:125599453-125603469	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3490342	chr8:125599453-125603469	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv5049	chr8:125599474-125603393	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4870906	ZNF572	cis	cerebellum	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125566000-125602400	Weak transcription	Aorta	Aorta
2	chr8:125570800-125605000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:125574400-125609400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:125579400-125601600	Weak transcription	Brain Anterior Caudate	brain
5	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
6	chr8:125585400-125609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:125586400-125603600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:125586800-125605000	Weak transcription	Right Atrium	heart
9	chr8:125586800-125605000	Weak transcription	NHDF-Ad	bronchial
10	chr8:125587000-125603400	Weak transcription	Stomach Mucosa	stomach
11	chr8:125587200-125605400	Weak transcription	Fetal Lung	lung
12	chr8:125587200-125605800	Weak transcription	Psoas Muscle	Psoas
13	chr8:125588800-125603400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:125590800-125603600	Strong transcription	HepG2	liver
15	chr8:125591000-125602600	Weak transcription	NHLF	lung
16	chr8:125591400-125603600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:125591800-125603000	Weak transcription	Fetal Brain Male	brain
18	chr8:125592000-125605400	Weak transcription	Osteobl	bone
19	chr8:125592000-125605600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:125592200-125602600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:125592200-125604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:125592200-125605400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr8:125592400-125603400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:125592600-125605000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:125593000-125602600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr8:125593600-125606800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:125594000-125603600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr8:125595600-125601600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:125595800-125602600	Weak transcription	Lung	lung
30	chr8:125596000-125605800	Weak transcription	HSMM	muscle
31	chr8:125596200-125603400	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
33	chr8:125596400-125609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:125596800-125605000	Weak transcription	HUVEC	blood vessel
35	chr8:125597000-125602000	Weak transcription	Brain Substantia Nigra	brain
36	chr8:125597000-125603800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:125597200-125601800	Weak transcription	Brain Hippocampus Middle	brain
38	chr8:125597200-125607000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:125597400-125602800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:125597600-125602600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:125598200-125603600	Strong transcription	Brain Germinal Matrix	brain
42	chr8:125598200-125603600	Strong transcription	Fetal Intestine Small	intestine
43	chr8:125598400-125603000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:125598400-125604400	Weak transcription	Primary T cells from cord blood	blood
45	chr8:125598400-125605000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr8:125598600-125603600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr8:125598600-125605000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr8:125598800-125602400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr8:125598800-125603200	Strong transcription	Fetal Brain Female	brain
50	chr8:125598800-125603400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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