Variant report

Variant	rs10956233
Chromosome Location	chr8:126265006-126265007
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126246905..126249499-chr8:126264857..126266632,2	K562	blood:
2	chr8:126263866..126265400-chr8:126266377..126268618,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10091027	0.86[ASW][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.94[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10110845	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs10283134	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994861	0.85[CEU][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4006772	0.89[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7461756	0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv949614	chr8:126063646-126376699	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126239600-126274000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr8:126240400-126267000	Weak transcription	Primary T cells from cord blood	blood
3	chr8:126243200-126267000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:126245600-126269600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:126247200-126265200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:126251400-126272000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:126251600-126265200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:126254000-126270400	Weak transcription	Hela-S3	cervix
9	chr8:126255200-126268600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:126255200-126271600	Weak transcription	Right Atrium	heart
11	chr8:126255400-126287800	Weak transcription	Primary B cells from cord blood	blood
12	chr8:126256200-126271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:126256400-126271800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:126256600-126268800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:126257400-126273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:126260600-126269400	Weak transcription	Fetal Lung	lung
17	chr8:126261400-126286000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:126261600-126272600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:126262200-126268800	Weak transcription	Pancreas	Pancrea
20	chr8:126262200-126288200	Weak transcription	Ovary	ovary
21	chr8:126262600-126265200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:126263400-126279000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr8:126263600-126267400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr8:126264000-126265600	Enhancers	GM12878-XiMat	blood
25	chr8:126264200-126265200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:126264200-126268200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:126264400-126268000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:126264400-126272000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr8:126264800-126310600	Weak transcription	Aorta	Aorta
30	chr8:126265000-126265200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr8:126265000-126265400	Enhancers	H9 Cell Line	embryonic stem cell
32	chr8:126265000-126265600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr8:126265000-126265600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:126265000-126266400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr8:126265000-126267800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr8:126265000-126268000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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