Variant report

Variant	rs10956955
Chromosome Location	chr8:87756451-87756452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10093860	0.84[ASN][1000 genomes]
rs10097706	0.85[ASN][1000 genomes]
rs10104596	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10106227	0.83[ASN][1000 genomes]
rs10107151	0.84[ASN][1000 genomes]
rs10956960	0.85[ASN][1000 genomes]
rs10956972	0.85[ASN][1000 genomes]
rs11785680	0.85[ASN][1000 genomes]
rs11787263	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1348143	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1379738	0.84[ASN][1000 genomes]
rs1379744	0.85[ASN][1000 genomes]
rs1458116	0.84[ASN][1000 genomes]
rs1458132	0.85[ASN][1000 genomes]
rs1598889	0.85[ASN][1000 genomes]
rs1870281	0.85[ASN][1000 genomes]
rs1870282	0.85[ASN][1000 genomes]
rs1982563	0.83[ASN][1000 genomes]
rs2125257	0.85[ASN][1000 genomes]
rs4320563	0.83[ASN][1000 genomes]
rs4961212	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6471545	0.80[ASN][1000 genomes]
rs7016140	0.85[ASN][1000 genomes]
rs7460875	0.85[ASN][1000 genomes]
rs7819575	0.85[ASN][1000 genomes]
rs7841737	0.85[ASN][1000 genomes]
rs7842722	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9332439	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87754400-87758000	Enhancers	Colon Smooth Muscle	Colon
2	chr8:87754800-87757400	Weak transcription	Fetal Stomach	stomach
3	chr8:87755600-87756600	Enhancers	Rectal Smooth Muscle	rectum
4	chr8:87756200-87756800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:87756200-87757200	Weak transcription	Fetal Lung	lung
6	chr8:87756400-87757400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links