Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10447974	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs10956955	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12678304	0.86[JPT][hapmap]
rs13275765	0.95[JPT][hapmap]
rs1348143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1441237	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1458118	0.85[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs1837743	0.81[JPT][hapmap]
rs2013536	0.83[JPT][hapmap]
rs2885471	0.81[CHB][hapmap]
rs3758063	0.95[JPT][hapmap]
rs3779794	0.91[JPT][hapmap]
rs3779796	0.91[JPT][hapmap]
rs3779797	0.91[JPT][hapmap]
rs4960985	0.82[JPT][hapmap]
rs4961208	0.85[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs4961212	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7002468	0.83[JPT][hapmap]
rs7842722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978132	0.85[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87726600-87727600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: