Variant report

Variant	rs1441237
Chromosome Location	chr8:87746644-87746645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10107915	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10447974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10504827	0.85[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11774141	0.81[EUR][1000 genomes]
rs11785126	0.85[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs11787263	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs12544347	0.98[GIH][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs12549955	0.80[EUR][1000 genomes]
rs12678304	0.81[CHD][hapmap];0.91[JPT][hapmap]
rs13275765	0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs1348143	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1458118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458131	0.81[EUR][1000 genomes]
rs16916239	0.81[JPT][hapmap]
rs16916907	0.81[CHD][hapmap]
rs16917400	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs16917435	0.86[AMR][1000 genomes]
rs1837743	0.86[JPT][hapmap]
rs2957793	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758063	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs3779794	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs3779796	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3779797	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4960988	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4961208	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs4961212	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs59899435	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62525710	0.93[EUR][1000 genomes]
rs6990710	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs6999648	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7460478	0.80[EUR][1000 genomes]
rs7842410	0.82[JPT][hapmap]
rs978132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs978133	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1441237	NECAB1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87736800-87752400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87746400-87746800	Enhancers	Fetal Stomach	stomach

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