Variant report
| Variant | rs1837743 |
|---|---|
| Chromosome Location | chr8:87704123-87704124 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1031649 | 0.83[CEU][hapmap] |
| rs11787263 | 0.81[JPT][hapmap] |
| rs12675140 | 0.82[CEU][hapmap] |
| rs13252425 | 0.83[CEU][hapmap] |
| rs13275765 | 0.86[JPT][hapmap] |
| rs13278423 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1372170 | 0.82[CEU][hapmap] |
| rs1441237 | 0.86[JPT][hapmap] |
| rs1458118 | 0.86[JPT][hapmap] |
| rs1458134 | 0.82[CEU][hapmap];0.83[JPT][hapmap] |
| rs1545221 | 0.83[CEU][hapmap] |
| rs16916907 | 0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2957792 | 0.86[JPT][hapmap] |
| rs3758063 | 0.86[JPT][hapmap] |
| rs3779794 | 0.82[JPT][hapmap] |
| rs4961208 | 0.86[JPT][hapmap] |
| rs4961212 | 0.81[JPT][hapmap] |
| rs7002468 | 0.91[JPT][hapmap] |
| rs7002965 | 0.83[CEU][hapmap] |
| rs971146 | 0.83[CEU][hapmap] |
| rs978134 | 0.93[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891151 | chr8:87690019-87776019 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026794 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv539662 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
