Variant report

Variant	rs3779794
Chromosome Location	chr8:87671396-87671397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10447974	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11787263	0.91[JPT][hapmap]
rs12678304	0.88[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap]
rs13265557	0.91[LWK][hapmap]
rs13275765	0.94[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap]
rs1348143	0.91[JPT][hapmap]
rs1441237	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs1458118	0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs16916239	0.86[JPT][hapmap];0.83[MEX][hapmap];0.80[AMR][1000 genomes]
rs1837743	0.82[JPT][hapmap]
rs35552599	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758063	0.94[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs3779796	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4960988	0.83[ASN][1000 genomes]
rs4961208	0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs4961212	0.91[JPT][hapmap]
rs978132	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	esv11525	chr8:87671249-87672604	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3779794	CNBD1	cis	cerebellum	SCAN
rs3779794	TMEM64	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87669400-87672000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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