Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10447974	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10504827	0.82[JPT][hapmap]
rs11785126	0.81[JPT][hapmap]
rs11787263	0.95[JPT][hapmap]
rs12678304	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap]
rs13275765	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs1348143	0.95[JPT][hapmap]
rs1441237	0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1458118	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs16916239	0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs1837743	0.86[JPT][hapmap]
rs35552599	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3779794	0.94[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3779796	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3779797	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4960988	0.86[ASN][1000 genomes]
rs4961208	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs4961212	0.95[JPT][hapmap]
rs7842410	0.82[JPT][hapmap]
rs978132	0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3758063	CNBD1	cis	cerebellum	SCAN
rs3758063	TMEM64	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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