Variant report

Variant	rs16916239
Chromosome Location	chr8:87643741-87643742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447974	0.81[JPT][hapmap]
rs12678304	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs13275765	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs1441237	0.81[JPT][hapmap]
rs1458118	0.81[JPT][hapmap]
rs35552599	0.80[AMR][1000 genomes]
rs3758063	0.81[JPT][hapmap]
rs3779794	0.86[JPT][hapmap];0.83[MEX][hapmap];0.80[AMR][1000 genomes]
rs3779796	0.82[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs3779797	0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs4961208	0.81[JPT][hapmap]
rs978132	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891150	chr8:87588519-87652115	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv818641	chr8:87643741-87658739	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16916239	CNBD1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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