Variant report
| Variant | rs12678304 |
|---|---|
| Chromosome Location | chr8:87660640-87660641 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87656085..87657978-chr8:87658309..87660793,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10447974 | 0.91[JPT][hapmap] |
| rs10504827 | 0.81[JPT][hapmap] |
| rs11785126 | 0.80[JPT][hapmap] |
| rs11787263 | 0.86[JPT][hapmap] |
| rs13275765 | 1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap] |
| rs1348143 | 0.86[JPT][hapmap] |
| rs1441237 | 0.81[CHD][hapmap];0.91[JPT][hapmap] |
| rs1458118 | 0.91[JPT][hapmap] |
| rs16916239 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs35552599 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3758063 | 1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap] |
| rs3779794 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3779796 | 0.88[CEU][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3779797 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4960988 | 0.81[ASN][1000 genomes] |
| rs4961208 | 0.91[JPT][hapmap] |
| rs4961212 | 0.86[JPT][hapmap] |
| rs978132 | 0.91[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
