Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10447974	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs10956955	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11787263	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12678304	0.86[JPT][hapmap]
rs13275765	0.95[JPT][hapmap]
rs1348143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1441237	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1458118	0.85[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap]
rs1837743	0.81[JPT][hapmap]
rs2013536	0.83[JPT][hapmap]
rs2885471	0.81[CHB][hapmap]
rs3758063	0.95[JPT][hapmap]
rs3779794	0.91[JPT][hapmap]
rs3779796	0.91[JPT][hapmap]
rs3779797	0.91[JPT][hapmap]
rs4960985	0.82[JPT][hapmap]
rs4961208	0.85[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap]
rs7002468	0.83[JPT][hapmap]
rs7842722	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs978132	0.85[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87716000-87721600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87717600-87721600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:87718000-87721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:87720000-87723400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:87720000-87726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:87721200-87722800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:87721200-87722800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:87721200-87723800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:87721400-87722800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:87721400-87722800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:87721400-87722800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:87721400-87723600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:87721400-87723800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:87721400-87724000	Enhancers	HUES64 Cell Line	embryonic stem cell

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