Variant report

Variant	rs1458118
Chromosome Location	chr8:87716283-87716284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:87715050..87716703-chr8:87803465..87805909,2	MCF-7	breast:
2	chr8:87715130..87716346-chr8:87797049..87798098,25	MCF-7	breast:
3	chr8:87715699..87716286-chr8:87798755..87799414,2	MCF-7	breast:
4	chr8:87715306..87716350-chr8:87803816..87804906,11	MCF-7	breast:
5	chr8:87715109..87716653-chr8:87797088..87798149,7	MCF-7	breast:
6	chr8:87715318..87716419-chr8:87803806..87804632,5	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM82B-2	chr8:87716177-87716630	NONHSAT127568

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10107915	0.82[CEU][hapmap]
rs10447974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504827	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs11785126	0.85[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs11787263	0.85[CEU][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs12544347	0.93[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs12678304	0.91[JPT][hapmap]
rs13275765	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs1348143	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1441237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16916239	0.81[JPT][hapmap]
rs16917400	0.85[CEU][hapmap]
rs1837743	0.86[JPT][hapmap]
rs2957793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758063	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs3779794	0.86[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap]
rs3779796	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3779797	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4960988	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[TSI][hapmap]
rs4961212	0.85[CEU][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap]
rs59899435	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62525710	0.87[EUR][1000 genomes]
rs6990710	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs6999648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7842410	0.82[JPT][hapmap]
rs978132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87715600-87717000	Enhancers	Brain Germinal Matrix	brain
2	chr8:87715800-87716600	Enhancers	Fetal Kidney	kidney
3	chr8:87715800-87717200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:87715800-87719200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:87716000-87717200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:87716000-87717200	Weak transcription	Fetal Stomach	stomach
7	chr8:87716000-87717800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:87716000-87718000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:87716000-87718400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:87716000-87718600	Weak transcription	Osteobl	bone
11	chr8:87716000-87721400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:87716000-87721600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr8:87716200-87716400	Enhancers	Fetal Brain Female	brain
14	chr8:87716200-87718600	Weak transcription	HUVEC	blood vessel

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