Variant report
| Variant | rs7842410 |
|---|---|
| Chromosome Location | chr8:87694905-87694906 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10094222 | 0.80[MEX][hapmap] |
| rs10107915 | 0.81[JPT][hapmap] |
| rs1031649 | 0.83[JPT][hapmap] |
| rs10447974 | 0.82[JPT][hapmap] |
| rs1219096 | 0.83[JPT][hapmap] |
| rs12675140 | 0.83[JPT][hapmap] |
| rs13252425 | 0.83[JPT][hapmap] |
| rs13268738 | 0.82[CHB][hapmap];0.83[CHD][hapmap] |
| rs13275765 | 0.82[JPT][hapmap] |
| rs13278423 | 0.87[JPT][hapmap] |
| rs1372170 | 0.83[JPT][hapmap] |
| rs1379742 | 0.83[JPT][hapmap] |
| rs1441237 | 0.82[JPT][hapmap] |
| rs1441238 | 0.83[JPT][hapmap] |
| rs1441243 | 0.83[CHD][hapmap] |
| rs1458118 | 0.82[JPT][hapmap] |
| rs1458134 | 0.82[JPT][hapmap] |
| rs1545221 | 0.83[JPT][hapmap] |
| rs1596027 | 0.83[JPT][hapmap] |
| rs16916907 | 0.91[JPT][hapmap] |
| rs2013536 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2885471 | 0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs315964 | 0.83[JPT][hapmap] |
| rs315973 | 0.87[JPT][hapmap] |
| rs315976 | 0.83[JPT][hapmap] |
| rs315977 | 0.83[JPT][hapmap] |
| rs3758063 | 0.82[JPT][hapmap] |
| rs3779790 | 0.86[CHD][hapmap] |
| rs3779799 | 0.86[ASN][1000 genomes] |
| rs4960985 | 0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4961208 | 0.82[JPT][hapmap] |
| rs4961211 | 0.82[JPT][hapmap] |
| rs7002965 | 0.83[JPT][hapmap] |
| rs7014125 | 0.83[JPT][hapmap] |
| rs7814749 | 0.83[JPT][hapmap] |
| rs971146 | 0.83[JPT][hapmap] |
| rs978132 | 0.82[JPT][hapmap] |
| rs978134 | 0.87[JPT][hapmap] |
| rs996077 | 0.83[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891151 | chr8:87690019-87776019 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
