Variant report

Variant	rs315973
Chromosome Location	chr8:87725820-87725821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1009574	0.82[CHB][hapmap]
rs1031649	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs10956948	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1219096	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12675140	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12676456	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13252425	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs13278423	0.91[JPT][hapmap]
rs1372170	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1379739	0.84[YRI][hapmap]
rs1379742	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs1441238	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs1458134	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1545221	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]
rs1596027	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs16916907	0.86[JPT][hapmap]
rs2013536	0.91[JPT][hapmap]
rs2885471	0.87[JPT][hapmap]
rs2919754	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957792	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs315963	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs315964	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs315965	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs315972	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs315976	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs315977	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3735967	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4960985	0.87[JPT][hapmap]
rs4961211	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7002468	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs7002965	0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7012836	0.85[AFR][1000 genomes]
rs7014125	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs7814749	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs7842410	0.87[JPT][hapmap]
rs971146	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs978134	0.87[JPT][hapmap]
rs996077	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87720000-87726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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