Variant report
| Variant | rs1009574 |
|---|---|
| Chromosome Location | chr8:87672258-87672259 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87668814..87670322-chr8:87672192..87674304,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000221137 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10094222 | 0.85[CEU][hapmap];0.95[JPT][hapmap] |
| rs10106841 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs10216710 | 0.89[CEU][hapmap];0.87[JPT][hapmap] |
| rs10216953 | 0.85[CEU][hapmap];0.87[JPT][hapmap] |
| rs1031649 | 0.87[JPT][hapmap] |
| rs1219096 | 0.87[JPT][hapmap] |
| rs12675140 | 0.87[JPT][hapmap] |
| rs13252425 | 0.87[JPT][hapmap] |
| rs13268738 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13278423 | 0.83[JPT][hapmap] |
| rs1372170 | 0.87[JPT][hapmap] |
| rs1379742 | 0.87[JPT][hapmap] |
| rs1441238 | 0.87[JPT][hapmap] |
| rs1441243 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap] |
| rs1458134 | 0.87[JPT][hapmap] |
| rs1545221 | 0.87[JPT][hapmap] |
| rs1596027 | 0.87[JPT][hapmap] |
| rs16916427 | 0.85[CEU][hapmap];0.87[JPT][hapmap] |
| rs16916907 | 0.82[JPT][hapmap] |
| rs2885471 | 0.87[CHB][hapmap] |
| rs315964 | 0.87[JPT][hapmap] |
| rs315973 | 0.82[CHB][hapmap] |
| rs315976 | 0.87[JPT][hapmap] |
| rs315977 | 0.87[JPT][hapmap] |
| rs3735967 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs3779790 | 0.92[CEU][hapmap];0.91[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3779801 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs4961211 | 0.87[JPT][hapmap] |
| rs59109039 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7002965 | 0.87[JPT][hapmap] |
| rs7014125 | 0.87[JPT][hapmap] |
| rs7814749 | 0.87[JPT][hapmap] |
| rs9297941 | 0.88[CEU][hapmap];0.87[JPT][hapmap] |
| rs971146 | 0.87[JPT][hapmap] |
| rs978134 | 0.83[JPT][hapmap] |
| rs996077 | 0.87[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | esv11525 | chr8:87671249-87672604 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv981963 | chr8:87671867-87673955 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
