Variant report

Variant	rs16916907
Chromosome Location	chr8:87718344-87718345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr8:87718304-87719076	GM12878	blood:	n/a	chr8:87719032-87719039 chr8:87718560-87718569

Variant related genes	Relation type
ENSG00000254115	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10094222	0.86[JPT][hapmap]
rs1009574	0.82[JPT][hapmap]
rs1031649	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs1219096	0.91[JPT][hapmap]
rs12675140	0.81[CEU][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs13252425	0.81[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs13268738	0.81[JPT][hapmap]
rs13278423	0.93[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1372170	0.81[CEU][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap]
rs1379742	0.91[JPT][hapmap]
rs1441237	0.81[CHD][hapmap]
rs1441238	0.91[JPT][hapmap]
rs1441243	0.81[JPT][hapmap]
rs1458134	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs1545221	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs1596027	0.91[JPT][hapmap]
rs1837743	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2013536	0.86[JPT][hapmap]
rs2885471	0.80[JPT][hapmap]
rs2957792	0.86[JPT][hapmap]
rs315964	0.91[JPT][hapmap]
rs315973	0.86[JPT][hapmap]
rs315976	0.91[JPT][hapmap]
rs315977	0.91[JPT][hapmap]
rs3735967	0.82[JPT][hapmap]
rs3779790	0.81[JPT][hapmap]
rs4960985	0.85[JPT][hapmap]
rs4961211	0.90[JPT][hapmap]
rs7002468	0.81[JPT][hapmap]
rs7002965	0.81[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs7014125	0.91[JPT][hapmap]
rs7814749	0.91[JPT][hapmap]
rs7842410	0.91[JPT][hapmap]
rs971146	0.81[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs978134	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs996077	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87715800-87719200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:87716000-87718400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:87716000-87718600	Weak transcription	Osteobl	bone
4	chr8:87716000-87721400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:87716000-87721600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:87716200-87718600	Weak transcription	HUVEC	blood vessel
7	chr8:87716400-87718400	Weak transcription	Fetal Brain Female	brain
8	chr8:87717200-87719000	Enhancers	Fetal Stomach	stomach
9	chr8:87717400-87718400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:87717400-87721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:87717600-87721600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:87717800-87718600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:87717800-87718600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:87717800-87718800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:87717800-87719000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:87718000-87718800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:87718000-87718800	Enhancers	Ovary	ovary
18	chr8:87718000-87720200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:87718000-87721200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:87718000-87721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:87718200-87718600	Enhancers	GM12878-XiMat	blood
22	chr8:87718200-87719000	Enhancers	Adipose Nuclei	Adipose
23	chr8:87718200-87719200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links