Variant report

Variant	rs3735967
Chromosome Location	chr8:87679098-87679099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10094222	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap]
rs1009574	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10106841	0.86[JPT][hapmap]
rs10216710	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs10216953	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs1031649	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1219096	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap]
rs12675140	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs13252425	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs13268738	0.81[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs13278423	0.83[JPT][hapmap]
rs1372170	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs1379742	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1441238	0.85[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap]
rs1441243	0.94[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.91[YRI][hapmap]
rs1458134	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1545221	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1596027	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs16916427	0.81[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.87[TSI][hapmap]
rs16916907	0.82[JPT][hapmap]
rs2013536	0.86[CHD][hapmap]
rs2957792	0.83[CHD][hapmap]
rs315964	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs315973	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs315976	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs315977	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs3779790	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3779801	0.86[JPT][hapmap]
rs4960985	0.83[CHD][hapmap]
rs4961211	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs59109039	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002965	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs7014125	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap]
rs7814749	0.85[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap]
rs9297941	0.85[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.87[TSI][hapmap]
rs971146	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs978134	0.83[JPT][hapmap]
rs996077	0.85[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3735967	RIPK2	cis	parietal	SCAN
rs3735967	RBM24	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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