Variant report

Variant	rs3779801
Chromosome Location	chr8:87642103-87642104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10094222	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs1009574	0.82[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10106841	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10216710	0.93[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10216953	0.96[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs13258590	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1441243	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs16916427	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3735967	0.86[JPT][hapmap]
rs3779790	0.81[CEU][hapmap]
rs9297941	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891150	chr8:87588519-87652115	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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