Variant report

Variant	rs13258590
Chromosome Location	chr8:87638453-87638454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10094222	0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap]
rs10106841	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10216710	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs10216953	0.89[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs13268738	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs1441243	0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs16916427	0.86[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.82[MKK][hapmap];0.85[YRI][hapmap]
rs3779790	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs3779801	0.92[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs9297941	0.85[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891150	chr8:87588519-87652115	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13258590	RBM24	trans	parietal	SCAN
rs13258590	RIPK2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87637200-87640200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:87638200-87639200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:87638200-87639200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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