Variant report
| Variant | rs10106841 |
|---|---|
| Chromosome Location | chr8:87644201-87644202 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:87643326..87646247-chr8:87673858..87676137,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000233915 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10094222 | 0.81[JPT][hapmap] |
| rs1009574 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs10216710 | 0.83[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs10216953 | 0.86[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs13258590 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1441243 | 0.82[CHB][hapmap] |
| rs16916427 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs3735967 | 0.86[JPT][hapmap] |
| rs3779801 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9297941 | 0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891150 | chr8:87588519-87652115 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv818641 | chr8:87643741-87658739 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
