Variant report

Variant	rs13278423
Chromosome Location	chr8:87720419-87720420
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10094222	0.87[JPT][hapmap]
rs1009574	0.83[JPT][hapmap]
rs1031649	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs1219096	0.95[JPT][hapmap]
rs12675140	0.89[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs13252425	0.89[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs13268738	0.81[JPT][hapmap]
rs1372170	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs1379742	0.95[JPT][hapmap]
rs1441238	0.95[JPT][hapmap]
rs1441243	0.82[JPT][hapmap]
rs1458134	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs1545221	0.89[CEU][hapmap];0.95[JPT][hapmap]
rs1596027	0.95[JPT][hapmap]
rs16916907	0.93[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1837743	0.92[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2013536	0.82[JPT][hapmap]
rs2885471	0.81[JPT][hapmap]
rs2957792	0.86[JPT][hapmap]
rs315964	0.95[JPT][hapmap]
rs315973	0.91[JPT][hapmap]
rs315976	0.95[JPT][hapmap]
rs315977	0.95[JPT][hapmap]
rs3735967	0.83[JPT][hapmap]
rs3779790	0.82[JPT][hapmap]
rs4960985	0.81[JPT][hapmap]
rs4961211	0.95[JPT][hapmap]
rs7002468	0.82[JPT][hapmap]
rs7002965	0.89[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs7014125	0.95[JPT][hapmap]
rs7814749	0.95[JPT][hapmap]
rs7842410	0.87[JPT][hapmap]
rs971146	0.89[CEU][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs978134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs996077	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87716000-87721400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:87716000-87721600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:87717400-87721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:87717600-87721600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:87718000-87721200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:87718000-87721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:87719000-87721400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:87719000-87721400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:87719000-87721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:87719800-87721200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:87720000-87721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:87720000-87723400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:87720000-87726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:87720200-87721400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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