Variant report

Variant	rs1379739
Chromosome Location	chr8:87755112-87755113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10093860	0.84[YRI][hapmap]
rs1031649	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1219096	0.90[CEU][hapmap];0.96[GIH][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12675140	0.82[LWK][hapmap];0.84[YRI][hapmap]
rs13252425	1.00[YRI][hapmap]
rs13271040	0.82[CHB][hapmap];0.95[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1372170	0.87[LWK][hapmap];0.84[YRI][hapmap]
rs1379742	1.00[YRI][hapmap]
rs1441238	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs1458119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458134	0.82[YRI][hapmap]
rs1545221	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1596027	0.89[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs1982563	0.81[CHD][hapmap]
rs2919754	0.83[AFR][1000 genomes]
rs2957792	0.84[LWK][hapmap];0.92[YRI][hapmap]
rs315964	0.84[YRI][hapmap]
rs315972	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs315973	0.84[YRI][hapmap]
rs315976	0.90[CEU][hapmap];0.96[GIH][hapmap];0.87[LWK][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs315977	0.90[CEU][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4961211	0.82[YRI][hapmap]
rs7002468	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs7002965	0.84[YRI][hapmap]
rs7003307	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7012836	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014125	0.96[LWK][hapmap];1.00[YRI][hapmap]
rs7357579	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814749	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs971146	1.00[YRI][hapmap]
rs996077	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv817372	chr8:87746712-88292389	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1015760	chr8:87750555-88304604	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87749400-87756000	Weak transcription	Fetal Lung	lung
2	chr8:87754400-87758000	Enhancers	Colon Smooth Muscle	Colon
3	chr8:87754800-87757400	Weak transcription	Fetal Stomach	stomach

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