Variant report

Variant	rs13275765
Chromosome Location	chr8:87692970-87692971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87682795..87685163-chr8:87691577..87693965,2	MCF-7	breast:
2	chr8:87632935..87634683-chr8:87691682..87694480,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10447974	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10504827	0.82[JPT][hapmap]
rs11785126	0.81[JPT][hapmap]
rs11787263	0.95[JPT][hapmap]
rs12678304	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.96[TSI][hapmap]
rs1348143	0.95[JPT][hapmap]
rs1441237	0.85[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1458118	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16916239	0.82[CEU][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs1837743	0.86[JPT][hapmap]
rs2957793	0.84[ASN][1000 genomes]
rs35552599	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3758063	1.00[ASW][hapmap];0.89[CEU][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs3779794	0.94[CEU][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779796	0.94[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779797	0.94[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4960988	0.92[ASN][1000 genomes]
rs4961208	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4961212	0.95[JPT][hapmap]
rs59899435	0.83[ASN][1000 genomes]
rs6999648	0.84[ASN][1000 genomes]
rs7842410	0.82[JPT][hapmap]
rs978132	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs978133	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13275765	CNBD1	cis	cerebellum	SCAN
rs13275765	TMEM64	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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