Variant report

Variant	rs978132
Chromosome Location	chr8:87715301-87715302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr8:87715269-87716022	HEK293	kidney:	n/a	chr8:87715701-87715711 chr8:87715698-87715712 chr8:87715811-87715818 chr8:87715697-87715713 chr8:87715697-87715713 chr8:87715698-87715712 chr8:87715700-87715709 chr8:87715701-87715710

No.	Distal block	Cell Line	Cell type
1	chr8:87715050..87716703-chr8:87803465..87805909,2	MCF-7	breast:
2	chr8:87630993..87631693-chr8:87715283..87716117,3	MCF-7	breast:
3	chr8:87715130..87716346-chr8:87797049..87798098,25	MCF-7	breast:
4	chr8:87713968..87715831-chr8:90615267..90617535,2	K562	blood:
5	chr8:87715292..87715843-chr8:90701514..90702072,2	K562	blood:
6	chr8:87715109..87716653-chr8:87797088..87798149,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254115	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10107915	0.83[CEU][hapmap]
rs10447974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504827	0.85[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs11785126	0.85[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs11787263	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs12544347	0.87[EUR][1000 genomes]
rs12678304	0.91[JPT][hapmap]
rs13275765	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1348143	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs1441237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1458118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16916239	0.81[JPT][hapmap]
rs16917400	0.85[CEU][hapmap]
rs2957793	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758063	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3779794	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3779796	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3779797	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4960988	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4961212	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs59899435	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62525710	0.87[EUR][1000 genomes]
rs6990710	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs6999648	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7842410	0.82[JPT][hapmap]
rs978133	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87713800-87715600	Weak transcription	Fetal Brain Male	brain

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