Variant report

Variant	rs10960995
Chromosome Location	chr9:13277779-13277780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13275549..13278427-chr9:13279998..13281670,2	K562	blood:
2	chr9:13266586..13268806-chr9:13275605..13278055,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10960994	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10960996	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10960997	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10960998	1.00[ASN][1000 genomes]
rs10960999	0.90[ASN][1000 genomes]
rs10961003	0.89[ASN][1000 genomes]
rs10961004	0.87[ASN][1000 genomes]
rs10961005	0.87[ASN][1000 genomes]
rs10961007	0.82[ASN][1000 genomes]
rs10961009	0.81[ASN][1000 genomes]
rs12237804	0.90[ASN][1000 genomes]
rs1330136	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73647125	0.83[ASN][1000 genomes]
rs7847055	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7855845	0.89[ASN][1000 genomes]
rs9696523	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13226800-13278000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:13240000-13278000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:13265600-13278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:13268800-13278000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr9:13268800-13278000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:13269800-13277800	Weak transcription	Aorta	Aorta
7	chr9:13270000-13277800	Weak transcription	Fetal Brain Male	brain
8	chr9:13270000-13278200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr9:13272600-13278000	Weak transcription	Right Ventricle	heart
10	chr9:13273200-13278200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:13274800-13278000	Enhancers	Fetal Heart	heart
12	chr9:13275200-13278000	Weak transcription	NHDF-Ad	bronchial
13	chr9:13275400-13277800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:13275400-13277800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:13275400-13277800	Weak transcription	NHLF	lung
16	chr9:13275400-13278000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:13275400-13278000	Weak transcription	Brain Germinal Matrix	brain
18	chr9:13275400-13278000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:13275400-13278200	Weak transcription	Liver	Liver
20	chr9:13275600-13277800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:13275600-13277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:13275600-13277800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr9:13275600-13277800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:13275600-13277800	Weak transcription	Osteobl	bone
25	chr9:13275600-13278000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:13275600-13278000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:13275600-13278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:13275600-13278000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:13275600-13278000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:13275600-13278000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:13275600-13278000	Weak transcription	Brain Angular Gyrus	brain
32	chr9:13275600-13278000	Weak transcription	Right Atrium	heart
33	chr9:13275600-13278000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr9:13275600-13278000	Weak transcription	HMEC	breast
35	chr9:13275600-13278000	Weak transcription	HSMM	muscle
36	chr9:13275600-13278200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:13275600-13278200	Weak transcription	Left Ventricle	heart
38	chr9:13275600-13278200	Weak transcription	Psoas Muscle	Psoas
39	chr9:13275600-13278200	Weak transcription	NHEK	skin
40	chr9:13275800-13277800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:13275800-13277800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:13275800-13277800	Weak transcription	Brain Substantia Nigra	brain
43	chr9:13275800-13277800	Weak transcription	NH-A	brain
44	chr9:13275800-13278000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:13275800-13278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:13275800-13278000	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:13276000-13277800	Weak transcription	A549	lung
48	chr9:13276000-13278000	Weak transcription	K562	blood
49	chr9:13276000-13278200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr9:13276200-13278000	Weak transcription	Brain Cingulate Gyrus	brain

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