Variant report
| Variant | rs10961007 |
|---|---|
| Chromosome Location | chr9:13285866-13285867 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:13276562..13283255-chr9:13284283..13286656,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234740 | Chromatin interaction |
| ENSG00000107186 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10756466 | 0.94[ASN][1000 genomes] |
| rs10960994 | 0.82[ASN][1000 genomes] |
| rs10960995 | 0.82[ASN][1000 genomes] |
| rs10960996 | 0.82[ASN][1000 genomes] |
| rs10960997 | 0.82[ASN][1000 genomes] |
| rs10960998 | 0.82[ASN][1000 genomes] |
| rs10960999 | 0.91[ASN][1000 genomes] |
| rs10961003 | 0.92[ASN][1000 genomes] |
| rs10961004 | 0.94[ASN][1000 genomes] |
| rs10961005 | 0.94[ASN][1000 genomes] |
| rs10961009 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1330136 | 0.82[ASN][1000 genomes] |
| rs1389751 | 0.81[ASN][1000 genomes] |
| rs16930234 | 0.81[ASN][1000 genomes] |
| rs73647125 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7855845 | 0.92[ASN][1000 genomes] |
| rs9696523 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv892578 | chr9:12942956-13485035 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv892583 | chr9:13166139-13350478 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv892584 | chr9:13214871-13350478 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv427838 | chr9:13229753-13393890 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv2752281 | chr9:13284600-13405072 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13280200-13295600 | Weak transcription | Aorta | Aorta |
| 2 | chr9:13284600-13286800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
