Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10961040	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12000439	0.86[EUR][1000 genomes]
rs12339589	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12339756	0.83[EUR][1000 genomes]
rs12340743	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12348887	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1330126	0.88[EUR][1000 genomes]
rs1928644	0.88[EUR][1000 genomes]
rs2017195	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57935015	0.82[EUR][1000 genomes]
rs6474770	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7027951	0.83[EUR][1000 genomes]
rs7045055	0.83[EUR][1000 genomes]
rs7048018	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048309	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73410180	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73410188	0.84[EUR][1000 genomes]
rs73410195	0.83[EUR][1000 genomes]
rs7849940	0.82[EUR][1000 genomes]
rs7857179	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527389	chr9:13380507-13388038	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13386400-13388800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:13386400-13389200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:13386600-13387400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13386600-13388000	Enhancers	Adipose Nuclei	Adipose
5	chr9:13386600-13388200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:13386600-13388400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:13386600-13388400	Enhancers	HSMM	muscle
8	chr9:13386600-13388800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:13386600-13389000	Enhancers	Osteobl	bone
10	chr9:13386600-13389200	Enhancers	NHDF-Ad	bronchial
11	chr9:13386800-13387800	Enhancers	Fetal Stomach	stomach
12	chr9:13386800-13388200	Enhancers	HSMMtube	muscle

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