Variant report

Variant	rs12339756
Chromosome Location	chr9:13426561-13426562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115277	0.85[EUR][1000 genomes]
rs10961035	0.83[EUR][1000 genomes]
rs10961038	0.84[EUR][1000 genomes]
rs10961040	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10961041	0.81[EUR][1000 genomes]
rs10961042	0.85[EUR][1000 genomes]
rs10961043	0.85[EUR][1000 genomes]
rs12000439	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12339589	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12340743	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12343381	0.89[EUR][1000 genomes]
rs12348720	0.84[EUR][1000 genomes]
rs12348887	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12349249	0.86[EUR][1000 genomes]
rs12351125	0.86[EUR][1000 genomes]
rs12352551	0.90[EUR][1000 genomes]
rs12352741	0.86[EUR][1000 genomes]
rs12353283	0.85[EUR][1000 genomes]
rs17190837	0.84[EUR][1000 genomes]
rs17191126	0.89[EUR][1000 genomes]
rs1927649	0.86[EUR][1000 genomes]
rs2017195	0.83[EUR][1000 genomes]
rs57935015	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59092758	0.85[EUR][1000 genomes]
rs59700548	0.84[EUR][1000 genomes]
rs6474770	0.82[EUR][1000 genomes]
rs7027951	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7045055	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7048018	0.80[EUR][1000 genomes]
rs7048309	0.82[EUR][1000 genomes]
rs73410180	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73410188	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73410195	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7849940	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7857179	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs880023	0.90[EUR][1000 genomes]
rs9987546	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13422600-13427800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:13425600-13428200	Weak transcription	Brain Germinal Matrix	brain
3	chr9:13425800-13426600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:13426200-13432000	Enhancers	Fetal Lung	lung

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