Variant report

Variant	rs12351125
Chromosome Location	chr9:13396812-13396813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115277	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961038	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961040	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10961041	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961042	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961043	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000439	0.89[EUR][1000 genomes]
rs12339589	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12339756	0.86[EUR][1000 genomes]
rs12340743	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12343381	0.95[EUR][1000 genomes]
rs12348720	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348887	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12349249	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352551	0.94[EUR][1000 genomes]
rs12352741	0.96[EUR][1000 genomes]
rs12353283	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330126	0.81[EUR][1000 genomes]
rs17190837	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17191126	0.95[EUR][1000 genomes]
rs1927649	0.96[EUR][1000 genomes]
rs1928644	0.81[EUR][1000 genomes]
rs57935015	0.84[EUR][1000 genomes]
rs59092758	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59700548	0.90[EUR][1000 genomes]
rs7027951	0.86[EUR][1000 genomes]
rs7045055	0.86[EUR][1000 genomes]
rs73410180	0.85[EUR][1000 genomes]
rs73410188	0.87[EUR][1000 genomes]
rs73410195	0.86[EUR][1000 genomes]
rs7849940	0.84[EUR][1000 genomes]
rs7857179	0.87[EUR][1000 genomes]
rs880023	0.94[EUR][1000 genomes]
rs9987546	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13395000-13397400	Enhancers	NHDF-Ad	bronchial
2	chr9:13395400-13409600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:13395600-13398000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:13395800-13397000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:13396600-13397000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:13396600-13397600	Enhancers	Liver	Liver
7	chr9:13396600-13399200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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