Variant report

Variant	rs10961038
Chromosome Location	chr9:13396022-13396023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13394864..13396918-chr9:13399082..13401367,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115277	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961040	0.85[EUR][1000 genomes]
rs10961041	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961042	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961043	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000439	0.87[EUR][1000 genomes]
rs12339589	0.85[EUR][1000 genomes]
rs12339756	0.84[EUR][1000 genomes]
rs12340743	0.85[EUR][1000 genomes]
rs12343381	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12348720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348887	0.85[EUR][1000 genomes]
rs12349249	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351125	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352551	0.94[EUR][1000 genomes]
rs12352741	0.98[EUR][1000 genomes]
rs12353283	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330126	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17190837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17191126	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1927649	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1928644	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57935015	0.82[EUR][1000 genomes]
rs59092758	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59700548	0.90[EUR][1000 genomes]
rs7027951	0.84[EUR][1000 genomes]
rs7045055	0.84[EUR][1000 genomes]
rs73410180	0.83[EUR][1000 genomes]
rs73410188	0.85[EUR][1000 genomes]
rs73410195	0.84[EUR][1000 genomes]
rs7849940	0.86[EUR][1000 genomes]
rs7857179	0.85[EUR][1000 genomes]
rs880023	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9987546	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2752281	chr9:13284600-13405072	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831515	chr9:13333205-13517308	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13395000-13397400	Enhancers	NHDF-Ad	bronchial
2	chr9:13395400-13409600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:13395600-13396600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13395600-13398000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:13395800-13397000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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